STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2000PFAM: Transport-associated; KEGG: dsa:Desal_2103 transport-associated. (181 aa)    
Predicted Functional Partners:
Dde_1999
KEGG: dvm:DvMF_0338 glycosyl transferase, group 2 family protein.
  
    0.726
Dde_2546
KEGG: dvm:DvMF_1066 hypothetical protein.
  
     0.713
Dde_2545
KEGG: dvm:DvMF_1065 hypothetical protein.
  
     0.681
Dde_1065
KEGG: dvl:Dvul_0655 hypothetical protein.
  
     0.680
Dde_2001
KEGG: dvl:Dvul_1399 phospholipid/glycerol acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase.
       0.664
Dde_2550
KEGG: dvm:DvMF_1072 hypothetical protein.
  
     0.540
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
  
    0.537
Dde_3393
KEGG: dvm:DvMF_1305 tail fiber protein, putative.
  
     0.515
Dde_1998
AAA ATPase central domain protein; KEGG: dvm:DvMF_0339 recombination factor protein RarA; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core.
       0.499
Dde_1086
KEGG: mag:amb4194 hypothetical protein.
  
    0.490
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.