Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Dde_2002PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: dvm:DvMF_0336 transcriptional regulator, TetR family. (191 aa)    
Predicted Functional Partners:
Dde_2840
KEGG: dvm:DvMF_2764 hypothetical protein.
  
     0.672
Dde_0580
KEGG: dvl:Dvul_0523 cytochrome c.
  
     0.560
Dde_2389
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_1913 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.545
Dde_0979
KEGG: dvm:DvMF_1183 hypothetical protein.
  
   
 0.542
Dde_3182
PFAM: Cytochrome c, class III; KEGG: dvl:Dvul_0215 cytochrome c class III.
  
     0.525
Dde_1656
PFAM: Glycosyl transferase, group 1; KEGG: dvm:DvMF_0573 glycosyl transferase group 1.
  
     0.514
Dde_2118
KEGG: dvl:Dvul_1551 hypothetical protein.
  
    0.479
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.469
Dde_3715
KEGG: dvl:Dvul_2720 multi-sensor signal transduction histidine kinase; PFAM: Signal transduction response regulator, receiver region; PAS fold-4; ATP-binding region, ATPase-like; SMART: Signal transduction response regulator, receiver region; PAC motif; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like.
  
   
 0.438
Dde_1542
KEGG: dvm:DvMF_0816 acetyl-CoA carboxylase; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region.
  
   
 0.426
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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