STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2003KEGG: dvm:DvMF_0335 hypothetical protein. (130 aa)    
Predicted Functional Partners:
Dde_3117
KEGG: dvl:Dvul_2321 hypothetical protein.
  
     0.728
Dde_1349
KEGG: dvm:DvMF_2966 hypothetical protein.
  
     0.727
Dde_2939
KEGG: dvl:Dvul_2272 hypothetical protein.
  
     0.695
Dde_0468
KEGG: dba:Dbac_3164 CoA-binding domain-containing protein.
  
     0.663
Dde_2018
HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; KEGG: dvl:Dvul_2625 HesB/YadR/YfhF-family protein.
  
     0.642
Dde_3102
PFAM: Nucleoside recognition; KEGG: dvu:DVU0651 hypothetical protein.
  
     0.636
Dde_1543
KEGG: dvm:DvMF_0815 hypothetical protein.
  
     0.633
Dde_1759
KEGG: dal:Dalk_4092 hypothetical protein.
  
     0.605
Dde_2004
PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: dvu:DVU1693 glutamyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.596
Dde_2562
KEGG: dvu:DVU1974 pyridine nucleotide-disulfide oxidoreductase; TIGRFAM: Pyridine nucleotide-disulfide oxidoreductase family protein, N-terminal; PFAM: Pyridine nucleotide-disulfide oxidoreductase, NAD-binding region; FAD-dependent pyridine nucleotide-disulfide oxidoreductase.
  
     0.570
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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