STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2020HesB/YadR/YfhF-family protein; PFAM: FeS cluster biogenesis; KEGG: dvl:Dvul_1688 HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family. (103 aa)    
Predicted Functional Partners:
Dde_3078
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
 
 
 0.996
Dde_3079
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
  
 0.692
Dde_1444
SufBD protein; PFAM: SUF system FeS cluster assembly, SufBD; KEGG: dvm:DvMF_0915 SufBD protein.
  
 
 0.670
Dde_1445
KEGG: dvl:Dvul_1972 ABC transporter; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core.
  
 
 0.643
Dde_0372
KEGG: dvm:DvMF_2272 hypothetical protein.
  
 
 
 0.642
Dde_3773
KEGG: dvl:Dvul_0115 hypothetical protein.
  
     0.612
Dde_1572
KEGG: dvm:DvMF_0779 PBS lyase heat domain protein repeat-containing protein.
    
 
 0.582
Dde_0580
KEGG: dvl:Dvul_0523 cytochrome c.
  
     0.574
Dde_3517
Molybdenum-pterin binding protein; KEGG: dsa:Desal_0307 TOBE domain protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; Integrase, catalytic core, phage.
  
     0.516
Dde_2739
PFAM: Glutaredoxin; KEGG: dvm:DvMF_2933 glutaredoxin.
  
  
 0.510
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.