STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2275Integral membrane protein; PFAM: Polysulphide reductase, NrfD; KEGG: dvu:DVU1286 reductase, transmembrane subunit. (387 aa)    
Predicted Functional Partners:
Dde_2274
Periplasmic (Tat), binds 2(4Fe-4S); PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvm:DvMF_0067 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 
 0.979
Dde_2273
Periplasmic (Sec) triheme cytochrome c; KEGG: dvm:DvMF_0068 cytochrome c family protein.
 
  
 0.975
Dde_2271
Inner membrane protein binds 2 heme b; PFAM: Nitrate reductase, gamma subunit; KEGG: dvm:DvMF_0070 nitrate reductase gamma subunit.
 
  
 0.956
Dde_2272
Cytoplasmic, binds 2 (4Fe-4S); KEGG: dvl:Dvul_1776 reductase, iron-sulfur binding subunit.
 
  
 0.953
Dde_2270
KEGG: dvm:DvMF_0071 hypothetical protein.
 
     0.927
Dde_2932
KEGG: dvm:DvMF_2690 hypothetical protein.
 
 
 
 0.859
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.829
Dde_2934
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_2270 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 
 0.811
Dde_0527
TIGRFAM: Sulphite reductase, dissimilatory-type beta subunit; KEGG: dvl:Dvul_2531 sulfite reductase, dissimilatory-type subunit beta; PFAM: Nitrite/sulphite reductase 4Fe-4S region; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like.
 
  
 0.791
Dde_0526
TIGRFAM: Sulphite reductase, dissimilatory-type alpha subunit; KEGG: dvl:Dvul_2532 sulfite reductase, dissimilatory-type subunit alpha; PFAM: Nitrite/sulphite reductase 4Fe-4S region.
 
  
 0.779
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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