STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2300PFAM: Toluene tolerance; KEGG: dvm:DvMF_0855 toluene tolerance family protein. (215 aa)    
Predicted Functional Partners:
Dde_2299
PFAM: Mammalian cell entry related; KEGG: dvm:DvMF_0854 mammalian cell entry related domain protein.
 
 0.997
Dde_2297
KEGG: dvu:DVU1246 hypothetical protein; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140.
 
 
 0.976
Dde_2301
PFAM: VacJ-like lipoprotein; KEGG: dvu:DVU1242 VacJ lipoprotein.
 
 
 
 0.972
Dde_2298
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: dvm:DvMF_0853 ABC transporter related; SMART: ATPase, AAA+ type, core.
 
 
 0.968
Dde_0021
PFAM: Mammalian cell entry related; KEGG: dma:DMR_00200 hypothetical protein.
  
 0.933
Dde_1984
Fe(3+)-transporting ATPase; PFAM: ABC transporter-like; KEGG: dma:DMR_32930 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core.
 
 
 0.897
Dde_1985
PFAM: Protein of unknown function DUF140; KEGG: dma:DMR_32940 putative ABC transporter permease protein.
 
 
 0.882
Dde_0023
PFAM: Protein of unknown function DUF140; KEGG: dsa:Desal_0007 hypothetical protein.
  
 
 0.877
Dde_0022
Sulfate-transporting ATPase; PFAM: ABC transporter-like; KEGG: dsa:Desal_0008 ABC transporter; SMART: ATPase, AAA+ type, core.
  
 
 0.858
Dde_1983
PFAM: Mammalian cell entry related; KEGG: dma:DMR_32920 hypothetical protein.
  
   
 0.577
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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