STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2337PFAM: Histone deacetylase superfamily; KEGG: dvm:DvMF_0024 histone deacetylase superfamily. (439 aa)    
Predicted Functional Partners:
htpG
ATP-binding region ATPase domain protein; Molecular chaperone. Has ATPase activity.
    
 0.887
Dde_2282
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: dvu:DVU2240 hydantoinase/oxoprolinase family protein.
 
 
   0.828
Dde_2070
Sporulation domain-containing protein; PFAM: Sporulation/cell division region, bacteria; KEGG: dvm:DvMF_0405 hypothetical protein.
    
 0.768
Dde_3707
KEGG: dvl:Dvul_2712 hypothetical protein.
    
 0.768
Dde_0779
KEGG: gwc:GWCH70_2069 SNF2-related protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
    
 0.752
Dde_1564
SNF2-related protein; KEGG: dvm:DvMF_0789 non-specific serine/threonine protein kinase; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; Zinc finger, SWIM-type; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal.
    
 0.752
Dde_1748
Helicase domain-containing protein; KEGG: dat:HRM2_p00390 putative DNA/RNA-dependent helicase, SNF II family domain protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal.
    
 0.752
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.724
Dde_2339
TIGRFAM: HDIG; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: dvl:Dvul_1091 metal dependent phosphohydrolase; SMART: Metal-dependent phosphohydrolase, HD region.
       0.688
Dde_3689
Phosphoglycerate dehydrogenase; KEGG: dvl:Dvul_2644 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region.
 
 
 0.670
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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