STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2647KEGG: dvm:DvMF_1115 thioesterase superfamily protein; TIGRFAM: Phenylacetic acid degradation-related protein; PFAM: Thioesterase superfamily. (138 aa)    
Predicted Functional Partners:
Dde_1609
Amino acid adenylation domain protein; SMART: Polyketide synthase, beta-ketoacyl synthase region; TIGRFAM: Amino acid adenylation; KEGG: dae:Dtox_2675 amino acid adenylation domain-containing protein; PFAM: AMP-dependent synthetase/ligase; Beta-ketoacyl synthase, C-terminal; Condensation domain; Beta-ketoacyl synthase, N-terminal; Phosphopantetheine-binding; Acyl transferase; Non-ribosomal peptide synthetase.
  
 
 0.817
plsX
Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.
  
  
 0.593
Dde_2646
KEGG: drt:Dret_2266 hypothetical protein; TIGRFAM: Uncharacterized protein family UPF0066; PFAM: Uncharacterized protein family UPF0066.
       0.581
Dde_2645
KEGG: dvm:DvMF_0994 hypothetical protein.
       0.570
purA
Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family.
  
    0.523
Dde_2644
KEGG: dvm:DvMF_0993 transcriptional regulator, Crp/Fnr family; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp.
  
    0.435
Dde_0573
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
  
  
 0.426
Dde_2294
(Acyl-carrier-protein) S-malonyltransferase; KEGG: dvl:Dvul_1813 malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase.
  
  
 0.410
birA
biotin/acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.402
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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