STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_2829PFAM: Major facilitator superfamily MFS-1; KEGG: dvl:Dvul_2230 major facilitator superfamily transporter. (396 aa)    
Predicted Functional Partners:
Dde_2830
AMMECR1 domain protein; KEGG: dma:DMR_28890 hypothetical protein; TIGRFAM: AMMECR1; PFAM: AMMECR1.
       0.572
Dde_2828
KEGG: dvm:DvMF_2776 hypothetical protein.
       0.528
Dde_2826
TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; PAS fold-4; KEGG: dvm:DvMF_2778 PAS/PAC sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS.
       0.506
Dde_2827
KEGG: dvl:Dvul_2228 UspA domain-containing protein.
       0.506
Dde_2825
PAS modulated sigma54 specific transcriptional regulator, Fis family; KEGG: dvl:Dvul_2226 sigma-54 dependent trancsriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; PAS fold-4; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; PAS; ATPase, AAA+ type, core.
       0.503
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
 
    0.425
Dde_2831
PFAM: Extracellular ligand-binding receptor; KEGG: dvm:DvMF_2773 extracellular ligand-binding receptor.
  
    0.421
Dde_0300
KEGG: dal:Dalk_2563 hypothetical protein.
  
     0.420
Dde_3158
KEGG: dvl:Dvul_2428 flagellar basal body rod protein FlgG; TIGRFAM: Flagellar basal-body rod FlgG; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Protein of unknown function DUF1078, C-terminal; Flagellar basal body rod protein, N-terminal; Belongs to the flagella basal body rod proteins family.
   
   0.420
Dde_3159
KEGG: dvl:Dvul_2429 hypothetical protein; TIGRFAM: Flagellar basal-body rod FlgF; Fagellar hook-basal body protein, FlgE/F/G; PFAM: Flagellar basal body rod protein, N-terminal; Protein of unknown function DUF1078, C-terminal.
   
   0.420
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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