STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (402 aa)    
Predicted Functional Partners:
Dde_3241
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
 
 
 0.999
Dde_3129
KEGG: dvm:DvMF_2625 phosphate butyryltransferase; PFAM: Phosphate acetyl/butaryl transferase.
  
 0.977
Dde_3276
Propanediol utilization protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate.
   
 0.971
Dde_3121
KEGG: bsu:BSU37960 aldehyde dehydrogenase; PFAM: Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
 0.938
Dde_2317
Butyrate--CoA ligase; KEGG: dvl:Dvul_0993 AMP-dependent synthetase and ligase; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.933
Dde_2823
TIGRFAM: Acetate--CoA ligase; KEGG: dvm:DvMF_2783 acetate/CoA ligase; PFAM: AMP-dependent synthetase/ligase.
   
 
 0.933
acsA
acetate/CoA ligase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.933
Dde_2164
PFAM: Acylphosphatase-like; KEGG: dsa:Desal_0646 acylphosphatase.
     
 0.910
acyP
PFAM: Acylphosphatase-like; KEGG: bts:Btus_1137 acylphosphatase.
     
 0.910
Dde_3243
DRTGG domain protein; PFAM: DRTGG; KEGG: dvm:DvMF_1866 DRTGG domain protein.
 
  
 0.906
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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