STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3353Hypothetical protein. (67 aa)    
Predicted Functional Partners:
Dde_3351
KEGG: dma:DMR_14500 hypothetical protein.
       0.773
Dde_3352
KEGG: dma:DMR_14510 hypothetical protein.
       0.773
Dde_3354
KEGG: dvu:DVU1136 host-nuclease inhibitor protein Gam.
       0.768
Dde_3350
PFAM: Transposase-like, Mu, C-terminal; Integrase, catalytic core; Transposase MuA/Repressor CI, DNA-binding; KEGG: dma:DMR_14490 hypothetical protein.
       0.762
Dde_3355
KEGG: dvu:DVU1754 hypothetical protein.
       0.756
Dde_3347
KEGG: dvu:DVU1143 hypothetical protein.
       0.741
Dde_3348
KEGG: dvm:DvMF_0712 hypothetical protein.
       0.741
Dde_3349
Hypothetical protein.
       0.741
Dde_3356
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
       0.698
Dde_3357
KEGG: dvm:DvMF_1270 hypothetical protein.
       0.472
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.