STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3371KEGG: dbr:Deba_1594 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Dde_3370
KEGG: dbr:Deba_1593 hypothetical protein.
       0.786
Dde_3372
KEGG: dvm:DvMF_1282 portal protein, putative.
       0.781
Dde_3368
Hypothetical protein.
       0.778
Dde_3369
Hypothetical protein.
       0.778
Dde_3373
PFAM: Protein of unknown function DUF935; KEGG: dbr:Deba_1596 hypothetical protein.
  
    0.776
Dde_3367
PFAM: Peptidase M15A, C-terminal; KEGG: bvi:Bcep1808_3253 peptidase M15A.
       0.773
Dde_3374
KEGG: dbr:Deba_1597 phage head morphogenesis protein, SPP1 gp7 family; TIGRFAM: Phage putative head morphogenesis protein, SPP1 gp7; PFAM: Phage putative head morphogenesis protein, SPP1 gp7.
       0.765
Dde_3375
KEGG: dvm:DvMF_1286 hypothetical protein.
  
    0.511
Dde_3377
KEGG: dbr:Deba_1589 hypothetical protein.
       0.468
Dde_3376
KEGG: dbr:Deba_1590 hypothetical protein.
       0.438
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.