STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Dde_3531KEGG: dvm:DvMF_0329 hypothetical protein. (266 aa)    
Predicted Functional Partners:
Dde_2344
PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; KEGG: dvm:DvMF_0009 protein of unknown function DUF814.
  
  
 0.915
Dde_1920
KEGG: sfu:Sfum_3791 abortive phage resistance protein-like protein.
  
  
 0.858
Dde_0416
KEGG: dth:DICTH_0482 myo-inositol catabolism protein.
   
    0.772
Dde_3528
PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: drt:Dret_2313 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
  
    0.536
Dde_3529
KEGG: drt:Dret_2312 iron-sulfur binding protein.
  
    0.536
Dde_3530
PFAM: Oxidoreductase FAD/NAD(P)-binding; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; Oxidoreductase FAD-binding region; KEGG: dsa:Desal_0596 oxidoreductase FAD/NAD(P)-binding domain protein.
       0.524
Dde_3527
PFAM: Methyl-viologen-reducing hydrogenase, delta subunit; KEGG: dma:DMR_01930 methyl-viologen-reducing hydrogenase delta subunit family protein.
  
    0.509
Dde_3524
KEGG: dsa:Desal_0602 heterodisulfide reductase, C subunit.
       0.496
Dde_3525
KEGG: dsa:Desal_0601 CoB--CoM heterodisulfide reductase; PFAM: Cysteine-rich region, CCG.
       0.496
Dde_3526
PFAM: FAD dependent oxidoreductase; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: dvl:Dvul_0828 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
       0.496
Your Current Organism:
Desulfovibrio alaskensis
NCBI taxonomy Id: 207559
Other names: D. alaskensis G20, Desulfovibrio alaskensis G20, Desulfovibrio alaskensis str. G20, Desulfovibrio alaskensis strain G20, Desulfovibrio desulfuricans subsp. desulfuricans str. G20
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