STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10720.1Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); COG2199 FOG: GGDEF domain. (561 aa)    
Predicted Functional Partners:
EAT12600.1
COG0642 Signal transduction histidine kinase.
 
 
 0.983
EAT12983.1
Putative sensor protein; COG0642 Signal transduction histidine kinase.
 
 
 0.981
EAT11963.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.980
EAT11365.1
COG0642 Signal transduction histidine kinase.
 
 
 0.979
EAT11976.1
Diguanylate cyclase (GGDEF domain); COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.965
EAT12981.1
Sensory box/GGDEF/GAF/EAL domain protein; COG2203 FOG: GAF domain.
 
 
0.951
EAT11798.1
Response regulator; COG0784 FOG: CheY-like receiver.
 
 
 0.945
EAT10741.1
COG0642 Signal transduction histidine kinase.
 
 
 0.942
EAT12037.1
Hypothetical protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.
  
  
 0.939
EAT11677.1
COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain.
 
 0.938
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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