STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13144.1COG0463 Glycosyltransferases involved in cell wall biogenesis. (264 aa)    
Predicted Functional Partners:
EAT13145.1
UDP-glucose lipid carrier transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
   
 0.901
EAT13139.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
 
 0.840
EAT11395.1
COG4676 Uncharacterized protein conserved in bacteria.
  
 
 0.801
EAT12076.1
Putative unknown membrane associated protein; COG0457 FOG: TPR repeat.
  
 
 0.796
EAT11783.1
COG0457 FOG: TPR repeat.
  
 
 0.796
EAT13751.1
COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
 
 0.796
EAT11781.1
Protein containing tetratricopeptide repeats; COG0457 FOG: TPR repeat.
  
 
 0.779
EAT13140.1
Hypothetical protein; COG0438 Glycosyltransferase.
     
 0.744
EAT13142.1
Hypothetical protein; COG0560 Phosphoserine phosphatase.
  
    0.739
EAT13143.1
Hypothetical protein.
       0.733
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.