STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13196.1COG1960 Acyl-CoA dehydrogenases. (385 aa)    
Predicted Functional Partners:
EAT13195.1
Probable biotin-dependent carboxylase; COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 0.969
FadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 0.945
EAT13198.1
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.944
EAT13460.1
COG2025 Electron transfer flavoprotein, alpha subunit.
 
 0.926
EAT13726.1
COG3173 Predicted aminoglycoside phosphotransferase.
 
 
 0.901
EAT12901.1
Probable 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
 0.873
EAT13194.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
  0.827
EAT13197.1
Probable enoyl-CoA hydratase/isomerase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
  0.792
EAT13461.1
COG2086 Electron transfer flavoprotein, beta subunit.
 
 
 0.678
EAT12089.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  
  0.629
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.