STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UcaAllophanate hydrolase subunit 2; COG0439 Biotin carboxylase. (1222 aa)    
Predicted Functional Partners:
AtzF
Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
 0.999
OadA
COG5016 Pyruvate/oxaloacetate carboxyltransferase.
 
 
0.997
OadA-2
COG5016 Pyruvate/oxaloacetate carboxyltransferase.
 
 
 0.997
EAT13305.1
ATP-grasp domain-containing protein; COG0825 Acetyl-CoA carboxylase alpha subunit.
 
 
0.990
EAT12407.1
LamB/YcsF family protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
  
 0.988
EAT12405.1
Hypothetical protein; COG1984 Allophanate hydrolase subunit 2.
 
0.980
PxpB
Hypothetical protein; COG2049 Allophanate hydrolase subunit 1.
 
 0.978
EAT12408.1
Hypothetical protein; Belongs to the D-glutamate cyclase family.
 
    0.978
EAT13203.1
Hypothetical protein.
   
 0.955
EAT13204.1
Hypothetical protein.
   
 0.955
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.