STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13225.1Hypothetical protein; COG0777 Acetyl-CoA carboxylase beta subunit. (183 aa)    
Predicted Functional Partners:
EAT13226.1
Hypothetical protein.
       0.752
EAT12021.1
General secretion pathway protein C; COG3031 Type II secretory pathway, component PulC.
  
     0.726
EAT11401.1
COG3014 Uncharacterized protein conserved in bacteria.
  
     0.704
EAT13454.1
General secretion pathway protein J; COG4795 Type II secretory pathway, component PulJ.
  
     0.700
EAT11535.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.693
EAT12005.1
Hypothetical protein; COG0085 DNA-directed RNA polymerase, beta subunit/140 kD subunit.
  
     0.649
EAT12795.1
Conjugative transfer protein.
  
     0.649
EAT12517.1
COG1749 Flagellar hook protein FlgE.
  
     0.645
EAT11536.1
COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.619
EAT10760.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.618
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.