STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13233.1COG1309 Transcriptional regulator. (210 aa)    
Predicted Functional Partners:
EAT13234.1
COG1376 Uncharacterized protein conserved in bacteria.
       0.738
NagZ
Glycoside hydrolase, family 3-like protein; COG1472 Beta-glucosidase-related glycosidases.
       0.720
EAT13236.1
COG0668 Small-conductance mechanosensitive channel.
       0.703
EAT13237.1
Methylthioadenosine phosphorylase; Purine nucleoside phosphorylase involved in purine salvage.
       0.702
EAT13229.1
COG1309 Transcriptional regulator.
 
     0.491
EAT13232.1
Hypothetical protein; COG5013 Nitrate reductase alpha subunit.
       0.489
EAT13231.1
COG2834 Outer membrane lipoprotein-sorting protein.
       0.447
EAT13230.1
Hypothetical protein; COG1033 Predicted exporters of the RND superfamily.
       0.406
EAT12142.1
Hypothetical protein.
  
     0.405
EAT11266.1
Hypothetical protein; COG3529 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain.
  
     0.402
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.