STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13256.1Hypothetical protein; COG1299 Phosphotransferase system, fructose-specific IIC component. (134 aa)    
Predicted Functional Partners:
EAT13259.1
Pentapeptide repeat family protein; COG5351 Uncharacterized protein conserved in bacteria.
 
  
 0.963
TssG
COG3520 Uncharacterized protein conserved in bacteria.
 
    0.949
TssF
COG3519 Uncharacterized protein conserved in bacteria.
 
     0.948
Hcp
Hcp protein; COG3157 Hemolysin-coregulated protein (uncharacterized).
 
   
 0.944
EAT13265.1
COG3523 Uncharacterized protein conserved in bacteria.
 
  
 0.944
EAT13266.1
COG3455 Uncharacterized protein conserved in bacteria.
 
    0.938
TssC
COG3516 Uncharacterized protein conserved in bacteria.
 
     0.937
TssK
COG3522 Uncharacterized protein conserved in bacteria.
 
     0.935
EAT13258.1
Hypothetical protein; COG1357 Uncharacterized low-complexity proteins.
 
     0.924
TssI
COG3501 Uncharacterized protein conserved in bacteria.
 
   
 0.898
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.