EAT13325.1 protein (Bermanella marisrubri) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

EAT13325.1

Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein. (180 aa)

Predicted Functional Partners:

rpmF

0.989

plsX

0.955

rpsC

0.955

rplK

0.936

rplA

0.923

rpsP

0.908

rpsF

0.906

rpsB

0.904

InfC

0.904

RplM

0.902

Your Current Organism:

Bermanella marisrubri

NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EAT13325.1	InfC	RED65_01155	RED65_10389	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	0.904
EAT13325.1	RplM	RED65_01155	RED65_05129	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	COG0102 Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.902
EAT13325.1	plsX	RED65_01155	RED65_01165	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	Fatty acid/phospholipid synthesis protein PlsX; Catalyzes the reversible formation of acyl-phosphate (acyl- PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.	0.955
EAT13325.1	rplA	RED65_01155	RED65_15588	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.923
EAT13325.1	rplK	RED65_01155	RED65_15593	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.936
EAT13325.1	rpmF	RED65_01155	RED65_01160	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.989
EAT13325.1	rpsB	RED65_01155	RED65_04005	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.904
EAT13325.1	rpsC	RED65_01155	RED65_14152	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.955
EAT13325.1	rpsF	RED65_01155	RED65_04680	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.906
EAT13325.1	rpsP	RED65_01155	RED65_05109	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.908
InfC	EAT13325.1	RED65_10389	RED65_01155	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	0.904
InfC	RplM	RED65_10389	RED65_05129	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	COG0102 Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.978
InfC	rplA	RED65_10389	RED65_15588	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.965
InfC	rplK	RED65_10389	RED65_15593	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.961
InfC	rpmF	RED65_10389	RED65_01160	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.931
InfC	rpsB	RED65_10389	RED65_04005	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.974
InfC	rpsC	RED65_10389	RED65_14152	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.974
InfC	rpsF	RED65_10389	RED65_04680	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.974
InfC	rpsP	RED65_10389	RED65_05109	COG0290 Translation initiation factor 3 (IF-3); Belongs to the IF-3 family.	COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.948
RplM	EAT13325.1	RED65_05129	RED65_01155	COG0102 Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.	0.902

page 1 of 6

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About