STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13339.1COG0277 FAD/FMN-containing dehydrogenases. (533 aa)    
Predicted Functional Partners:
EAT13341.1
COG1070 Sugar (pentulose and hexulose) kinases.
 
   
 0.956
EAT13340.1
COG0578 Glycerol-3-phosphate dehydrogenase.
   
 0.922
EAT12676.1
Protein containing QXW lectin repeats.
  
    0.604
EAT13338.1
Probable transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
 
     0.577
EAT13460.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.523
EAT13461.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.521
EAT12746.1
Probable transcriptional regulator; COG3226 Uncharacterized protein conserved in bacteria.
  
     0.521
GltB
COG0067 Glutamate synthase domain 1.
     
 0.499
plsB
COG2937 Glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
    
 0.488
Pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.480
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.