STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13379.1Hypothetical protein. (45 aa)    
Predicted Functional Partners:
EAT13378.1
COG2976 Uncharacterized protein conserved in bacteria.
       0.773
EAT13377.1
Outer membrane receptor protein.
       0.757
EAT13380.1
Hypothetical protein.
       0.757
EAT13381.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
       0.757
EAT13382.1
Hypothetical protein.
       0.757
EAT13383.1
Hypothetical protein.
       0.721
EAT13384.1
Hypothetical protein.
       0.721
EAT13385.1
Hypothetical protein.
       0.721
EAT13376.1
Hypothetical protein.
       0.600
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.