STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13415.1tonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family. (204 aa)    
Predicted Functional Partners:
EAT13414.1
TonB system transport protein ExbD2; COG0848 Biopolymer transport protein.
 
 
 0.977
EAT13412.1
TolR; COG0419 ATPase involved in DNA repair.
 
 
 0.967
EAT13413.1
TonB system transport protein ExbB2; COG0811 Biopolymer transport proteins.
 
 
 0.960
EAT13416.1
TPR-repeat-containing protein; COG0457 FOG: TPR repeat.
 
     0.948
EAT13411.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
 
     0.941
EAT12074.1
COG0848 Biopolymer transport protein.
 
 
 0.894
EAT12072.1
TonB system biopolymer transport component; COG0840 Methyl-accepting chemotaxis protein.
 
 
 0.881
EAT12073.1
TonB system biopolymer transport component; COG0811 Biopolymer transport proteins.
 
 
 0.876
EAT12069.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
   0.806
EAT10774.1
COG4206 Outer membrane cobalamin receptor protein.
 
 
 
 0.800
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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