STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT13454.1General secretion pathway protein J; COG4795 Type II secretory pathway, component PulJ. (240 aa)    
Predicted Functional Partners:
GspI
General secretion pathway protein I; COG2165 Type II secretory pathway, pseudopilin PulG.
 
 
 0.998
GspK
General secretion pathway protein K; COG3156 Type II secretory pathway, component PulK.
 
 
 0.997
GspG
General secretion pathway protein G; COG2165 Type II secretory pathway, pseudopilin PulG.
 
 
 0.978
EAT13452.1
Type II secretory pathway, component PulL; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.961
EAT13451.1
Type II secretory pathway, component PulM; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.952
GspF
General secretion pathway protein F; COG1459 Type II secretory pathway, component PulF.
 
  
 0.887
GspD
COG1450 Type II secretory pathway, component PulD.
 
  
 0.870
EAT12021.1
General secretion pathway protein C; COG3031 Type II secretory pathway, component PulC.
 
  
 0.866
GspE
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.815
GspH
Hypothetical protein.
     
 0.811
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.