STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10867.1Hypothetical protein. (108 aa)    
Predicted Functional Partners:
EAT10863.1
Hypothetical protein.
       0.773
EAT10864.1
Hypothetical protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.773
EAT10865.1
TraH.
       0.773
EAT10866.1
TraG; COG0840 Methyl-accepting chemotaxis protein.
       0.773
EAT10858.1
COG0539 Ribosomal protein S1.
       0.519
EAT10859.1
Type IV secretory pathway protease TraF-like protein; COG0681 Signal peptidase I.
       0.519
EAT10860.1
TraW.
       0.519
TraU
TraU.
       0.519
EAT10862.1
Hypothetical protein; COG1210 UDP-glucose pyrophosphorylase.
       0.519
EAT10854.1
Hypothetical protein.
       0.414
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.