STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11002.1Putative transmembrane protein; COG3619 Predicted membrane protein. (220 aa)    
Predicted Functional Partners:
EAT11001.1
COG3038 Cytochrome B561.
       0.689
DsbD
Protein-disulfide reductase; COG4232 Thiol:disulfide interchange protein.
       0.570
EAT11401.1
COG3014 Uncharacterized protein conserved in bacteria.
  
     0.466
RibD
Riboflavin-specific deaminase/reductase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
   
    0.456
EAT13960.1
Hypothetical protein.
  
     0.436
EAT10999.1
Thioredoxin family protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
       0.421
EAT11402.1
Putative lipoprotein; COG3417 Collagen-binding surface adhesin SpaP (antigen I/II family).
  
     0.418
EAT10998.1
Putative lipoprotein.
       0.407
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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