STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10935.1MotA/TolQ/ExbB proton channel family protein; COG0811 Biopolymer transport proteins. (220 aa)    
Predicted Functional Partners:
EAT10937.1
Hypothetical protein.
 
   0.966
EAT10938.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.937
EAT10936.1
COG0848 Biopolymer transport protein.
 
 
 0.933
EAT13314.1
COG0848 Biopolymer transport protein.
 
 
 0.875
tolR
TolR protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.801
EAT12074.1
COG0848 Biopolymer transport protein.
 
 
 0.790
EAT13414.1
TonB system transport protein ExbD2; COG0848 Biopolymer transport protein.
 
 
 0.745
LptB
ABC transporter, ATP-binding protein; COG1137 ABC-type (unclassified) transport system, ATPase component.
  
     0.689
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosam ine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
  
 0.537
lpxD
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
  
     0.526
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.