STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10936.1COG0848 Biopolymer transport protein. (156 aa)    
Predicted Functional Partners:
EAT10938.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.937
EAT10937.1
Hypothetical protein.
 
     0.936
EAT10935.1
MotA/TolQ/ExbB proton channel family protein; COG0811 Biopolymer transport proteins.
 
 
 0.933
EAT13313.1
COG0811 Biopolymer transport proteins.
 
 
 0.654
EAT12075.1
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.654
EAT11216.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
 
 
 0.645
EAT13415.1
tonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
  
 
 0.609
EAT12999.1
Hypothetical protein.
  
 
 0.609
EAT11598.1
Formyltetrahydrofolate deformylase; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
 
 0.599
EAT13412.1
TolR; COG0419 ATPase involved in DNA repair.
  
 
 0.573
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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