STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YfcCCOG1288 Predicted membrane protein. (506 aa)    
Predicted Functional Partners:
EAT10817.1
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
 
     0.932
EAT10815.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
 
     0.687
EAT10818.1
Hypothetical protein; COG4242 Cyanophycinase and related exopeptidases; Belongs to the peptidase S51 family.
 
     0.659
EAT10820.1
Cyanophycinase and related exopeptidase-like protein; Belongs to the peptidase S51 family.
 
     0.619
EAT12750.1
Efflux pump component MtrF; COG2978 Putative p-aminobenzoyl-glutamate transporter.
  
     0.603
EAT10819.1
Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
       0.572
EAT12196.1
COG2931 RTX toxins and related Ca2+-binding proteins; Belongs to the peptidase S51 family.
 
     0.427
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.