STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10819.1Transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators. (166 aa)    
Predicted Functional Partners:
EAT11460.1
Putative transcriptional regulator, AsnC family protein; COG1522 Transcriptional regulators.
  
     0.769
EAT10818.1
Hypothetical protein; COG4242 Cyanophycinase and related exopeptidases; Belongs to the peptidase S51 family.
       0.762
EAT10820.1
Cyanophycinase and related exopeptidase-like protein; Belongs to the peptidase S51 family.
       0.634
EAT10817.1
Isoaspartyl dipeptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
       0.578
YfcC
COG1288 Predicted membrane protein.
       0.572
GltB
COG0067 Glutamate synthase domain 1.
     
 0.523
PutA
Delta 1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.477
PutA-2
Delta 1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.477
EAT10815.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
       0.443
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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