STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10962.1Hypothetical protein; COG3000 Sterol desaturase. (300 aa)    
Predicted Functional Partners:
EAT10963.1
Phosphoribosylformylglycinamidine synthase.
       0.553
EAT13496.1
COG3714 Predicted membrane protein.
 
     0.543
UbiH
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 
 0.487
EAT11413.1
COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases.
   
 
 0.487
EAT13568.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
 
 0.419
EAT13442.1
Hypothetical protein; COG0702 Predicted nucleoside-diphosphate-sugar epimerases.
  
 
 0.405
EAT12354.1
COG0810 Periplasmic protein TonB, links inner and outer membranes.
   
    0.405
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.