STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12030.1Hypothetical protein. (359 aa)    
Predicted Functional Partners:
EAT12031.1
COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
       0.777
UrtC
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.776
UrtB
COG0559 Branched-chain amino acid ABC-type transport system, permease components; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.762
Uca
Allophanate hydrolase subunit 2; COG0439 Biotin carboxylase.
     
 0.545
EAT12032.1
Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
    0.545
EAT13337.1
COG0642 Signal transduction histidine kinase.
  
 
 0.528
EAT12029.1
Hypothetical protein.
       0.512
UrtE
COG0410 ABC-type branched-chain amino acid transport systems, ATPase component.
  
  
 0.499
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
  
    0.433
GltB
COG0067 Glutamate synthase domain 1.
     
 0.433
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.