STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12070.1Putative lipoprotein. (514 aa)    
Predicted Functional Partners:
EAT12069.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
   
 0.903
bamA
Probable outer membrane protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.851
EAT12076.1
Putative unknown membrane associated protein; COG0457 FOG: TPR repeat.
 
    0.801
EAT11068.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
 
 0.795
EAT12075.1
Putative TonB2 protein; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
     0.762
bamD
Competence lipoprotein ComL, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.758
EAT12071.1
TonB system biopolymer transport component; COG0419 ATPase involved in DNA repair.
 
 
   0.743
EAT12072.1
TonB system biopolymer transport component; COG0840 Methyl-accepting chemotaxis protein.
 
     0.727
EAT11625.1
KpsD protein; COG1596 Periplasmic protein involved in polysaccharide export.
  
     0.638
EAT11933.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.635
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.