node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EAT10828.1 | EAT12141.1 | RED65_07044 | RED65_03925 | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | COG1278 Cold shock proteins. | 0.717 |
EAT10828.1 | rplO | RED65_07044 | RED65_14087 | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.787 |
EAT10828.1 | rpsE | RED65_07044 | RED65_14097 | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.640 |
EAT10828.1 | rpsL | RED65_07044 | RED65_15563 | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.521 |
EAT10828.1 | rpsQ | RED65_07044 | RED65_14137 | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.499 |
EAT12141.1 | EAT10828.1 | RED65_03925 | RED65_07044 | COG1278 Cold shock proteins. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.717 |
EAT12141.1 | rplO | RED65_03925 | RED65_14087 | COG1278 Cold shock proteins. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.488 |
EAT12141.1 | rpmE | RED65_03925 | RED65_14222 | COG1278 Cold shock proteins. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.502 |
EAT12141.1 | rpmJ | RED65_03925 | RED65_14072 | COG1278 Cold shock proteins. | COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.483 |
EAT12141.1 | rpsE | RED65_03925 | RED65_14097 | COG1278 Cold shock proteins. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.456 |
EAT12141.1 | rpsL | RED65_03925 | RED65_15563 | COG1278 Cold shock proteins. | 30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.535 |
EAT12141.1 | rpsQ | RED65_03925 | RED65_14137 | COG1278 Cold shock proteins. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.486 |
EAT12141.1 | rpsT | RED65_03925 | RED65_07984 | COG1278 Cold shock proteins. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.442 |
EAT12141.1 | rpsU | RED65_03925 | RED65_11989 | COG1278 Cold shock proteins. | COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.441 |
EAT12141.1 | slyX | RED65_03925 | RED65_03920 | COG1278 Cold shock proteins. | COG2900 Uncharacterized protein conserved in bacteria; Belongs to the SlyX family. | 0.546 |
rplO | EAT10828.1 | RED65_14087 | RED65_07044 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | ATP-dependent helicase HepA; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. | 0.787 |
rplO | EAT12141.1 | RED65_14087 | RED65_03925 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | COG1278 Cold shock proteins. | 0.488 |
rplO | rpmE | RED65_14087 | RED65_14222 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 50S ribosomal protein L31; Binds the 23S rRNA. | 0.923 |
rplO | rpmJ | RED65_14087 | RED65_14072 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | COG0257 Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. | 0.998 |
rplO | rpsE | RED65_14087 | RED65_14097 | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |