STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12191.1Oxidoreductase, FAD-binding protein; COG0277 FAD/FMN-containing dehydrogenases. (451 aa)    
Predicted Functional Partners:
EAT12192.1
Alanine racemase-like protein; COG3616 Predicted amino acid aldolase or racemase.
 
    0.952
EAT12190.1
COG3245 Cytochrome c5.
 
    0.841
EAT13460.1
COG2025 Electron transfer flavoprotein, alpha subunit.
  
 
 0.523
EAT13461.1
COG2086 Electron transfer flavoprotein, beta subunit.
  
 
 0.521
EAT12238.1
COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.505
GltB
COG0067 Glutamate synthase domain 1.
     
 0.499
EAT12189.1
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG2202 FOG: PAS/PAC domain.
       0.494
plsB
COG2937 Glycerol-3-phosphate O-acyltransferase; Belongs to the GPAT/DAPAT family.
    
 0.488
Pta
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
  
  
 0.480
CoxB
Cytochrome-c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
   
 
 0.461
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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