STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT12244.1COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (265 aa)    
Predicted Functional Partners:
FadB
Fatty oxidation complex, alpha subunit; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
 
0.939
EAT12901.1
Probable 3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
 
0.928
EAT12607.1
Hypothetical protein; COG2198 FOG: HPt domain.
   
 
 0.789
EAT13337.1
COG0642 Signal transduction histidine kinase.
  
 
 0.778
EAT12243.1
enoyl-CoA hydratase.
       0.773
EAT12600.1
COG0642 Signal transduction histidine kinase.
  
 
 0.771
EAT11365.1
COG0642 Signal transduction histidine kinase.
  
 
 0.771
EAT12983.1
Putative sensor protein; COG0642 Signal transduction histidine kinase.
  
 
 0.771
EAT10714.1
Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine; COG0642 Signal transduction histidine kinase.
   
 
 0.770
EAT13220.1
COG0642 Signal transduction histidine kinase.
   
 
 0.770
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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