STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10706.1COG0500 SAM-dependent methyltransferases. (238 aa)    
Predicted Functional Partners:
rnhA
RNase H; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
      0.925
dnaQ
DNA polymerase III, epsilon subunit; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease.
  
    0.826
EAT10705.1
COG0741 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains).
     
 0.674
EAT12129.1
Sigma factor algU negative regulatory protein MucB; COG3026 Negative regulator of sigma E activity.
  
     0.632
EAT11684.1
COG2976 Uncharacterized protein conserved in bacteria.
  
     0.614
EAT10709.1
Methyl-accepting chemotaxis protein.
       0.582
MreD
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
  
     0.581
EAT11246.1
COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 
   0.565
EAT10710.1
Cation/multidrug efflux pump; COG0341 Preprotein translocase subunit SecF.
       0.556
EAT10704.1
Putative binding protein component ofABC transporter; COG4166 ABC-type oligopeptide transport system, periplasmic component.
       0.479
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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