STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11452.1Amidophosphoribosyltransferase family protein; COG1040 Predicted amidophosphoribosyltransferases. (148 aa)    
Predicted Functional Partners:
DprA
Smf protein; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.871
EAT10823.1
Mg chelatase-related protein; COG0606 Predicted ATPase with chaperone activity.
 
  
 0.855
EAT13312.1
DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein.
 
  
 0.848
RadC
COG2003 DNA repair proteins; Belongs to the UPF0758 family.
 
    0.835
EAT10891.1
SMF protein; COG0758 Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake.
 
 
 0.829
EAT12037.1
Hypothetical protein; COG1766 Flagellar biosynthesis/type III secretory pathway lipoprotein.
  
    0.790
srkA
Hypothetical protein; A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response.
  
    0.717
aroA
Hypothetical protein; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
   
  
 0.630
FlgC
COG1558 Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
   0.629
EAT10960.1
Hypothetical protein; COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase; Belongs to the UPF0102 family.
 
    0.617
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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