STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AmpDN-acetyl-anhydromuramyl-L-alanine amidase AmpD; COG3023 Negative regulator of beta-lactamase expression. (183 aa)    
Predicted Functional Partners:
AmpE
COG3725 Membrane protein required for beta-lactamase induction.
  
  
 0.848
EAT11504.1
COG0157 Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
  
  
 0.675
anmK
Hypothetical protein; Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling; Belongs to the anhydro-N-acetylmuramic acid kinase family.
  
   
 0.622
NagZ
Glycoside hydrolase, family 3-like protein; COG1472 Beta-glucosidase-related glycosidases.
 
   
 0.527
EAT11505.1
COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
       0.527
EAT10779.1
Muropeptide MFS uptake transporter AmpG; COG0477 Permeases of the major facilitator superfamily.
 
   
 0.504
mpl
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl- meso-diaminopimelate by linking it to UDP-N-acetylmuramate. Belongs to the MurCDEF family. Mpl subfamily.
  
   
 0.503
EAT12809.1
Related to Ser/Thr protein kinase; COG3178 Predicted phosphotransferase related to Ser/Thr protein kinases.
  
   
 0.479
EAT13325.1
Hypothetical protein; COG1399 Predicted metal-binding, possibly nucleic acid-binding protein.
 
    0.426
EAT12294.1
COG0860 N-acetylmuramoyl-L-alanine amidase.
  
  
 0.425
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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