STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11507.1COG4969 Tfp pilus assembly protein, major pilin PilA; Belongs to the N-Me-Phe pilin family. (154 aa)    
Predicted Functional Partners:
EAT11510.1
Type 4 prepilin-like proteins leader peptide processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
   
 0.744
EAT11509.1
COG1459 Type II secretory pathway, component PulF.
 
   
 0.732
EAT12423.1
Type 4 fimbrial biogenesis protein PilQ; COG4796 Type II secretory pathway, component HofQ.
 
   
 0.718
PilB
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
  
 0.630
EAT11134.1
COG4968 Tfp pilus assembly protein PilE.
 
   
 0.597
EAT12427.1
COG4972 Tfp pilus assembly protein, ATPase PilM.
 
   
 0.574
EAT12931.1
COG2805 Tfp pilus assembly protein, pilus retraction ATPase PilT.
 
   
 0.562
PilO
Type 4 fimbrial biogenesis protein PilO; COG3167 Tfp pilus assembly protein PilO.
  
   
 0.528
EAT12930.1
COG5008 Tfp pilus assembly protein, ATPase PilU.
  
   
 0.518
EAT13312.1
DNA internalization-related competence protein ComEC/Rec2; COG0658 Predicted membrane metal-binding protein.
  
   
 0.475
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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