STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11136.1Hypothetical protein. (101 aa)    
Predicted Functional Partners:
EAT11137.1
COG4726 Tfp pilus assembly protein PilX.
       0.773
EAT11134.1
COG4968 Tfp pilus assembly protein PilE.
       0.737
EAT11135.1
COG3419 Tfp pilus assembly protein, tip-associated adhesin PilY1.
       0.737
EAT11138.1
Pilin like competence factor; COG4966 Tfp pilus assembly protein PilW.
       0.732
PilV
COG4967 Tfp pilus assembly protein PilV.
       0.732
EAT11140.1
Putative type-4 fimbrial pilin related signal peptide protein; COG4970 Tfp pilus assembly protein FimT.
       0.726
EAT11141.1
Putative type IV pilus biogenesis protein; COG4970 Tfp pilus assembly protein FimT.
       0.472
EAT11133.1
COG0513 Superfamily II DNA and RNA helicases; Belongs to the DEAD box helicase family.
       0.467
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.