STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11786.1Hypothetical protein; COG0285 Folylpolyglutamate synthase. (169 aa)    
Predicted Functional Partners:
EAT11788.1
Hypothetical protein.
 
   0.975
EAT11785.1
COG0811 Biopolymer transport proteins.
 
   0.961
EAT11787.1
COG0848 Biopolymer transport protein.
 
     0.957
EAT11065.1
COG0811 Biopolymer transport proteins.
 
   0.882
EAT11062.1
Hypothetical protein.
  
   0.876
EAT11782.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
  
 0.875
EAT11783.1
COG0457 FOG: TPR repeat.
 
 
   0.868
EAT11063.1
COG0848 Biopolymer transport protein.
 
     0.783
EAT11068.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
    0.780
EAT11067.1
COG0457 FOG: TPR repeat.
  
     0.769
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.