STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11835.1Hypothetical protein; COG0668 Small-conductance mechanosensitive channel. (171 aa)    
Predicted Functional Partners:
EAT11836.1
Succinylglutamate desuccinylase/aspartoacylase; COG3608 Predicted deacylase.
       0.788
EAT11834.1
COG4067 Uncharacterized protein conserved in archaea.
       0.785
rimK
COG0189 Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase); Belongs to the RimK family.
       0.781
EAT11302.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
     0.694
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
   
    0.531
EAT12062.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.505
EAT11833.1
COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
       0.503
EAT11832.1
ADA regulatory protein; COG0350 Methylated DNA-protein cysteine methyltransferase.
       0.495
EAT11838.1
COG4420 Predicted membrane protein.
       0.491
EAT11830.1
Putative response regulator; COG1776 Chemotaxis protein CheC, inhibitor of MCP methylation.
 
     0.459
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.