STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SufDFeS assembly protein SufD; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component. (451 aa)    
Predicted Functional Partners:
SufC
Cysteine desulfurase activator ATPase; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 0.999
EAT11695.1
COG0520 Selenocysteine lyase; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 0.997
SufB
Cysteine desulfurase activator SufB; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 
0.997
SufT
COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
 
   
 0.946
EAT11694.1
Hypothetical protein; Belongs to the HesB/IscA family.
  
 
 0.920
EAT11690.1
COG2166 SufE protein probably involved in Fe-S center assembly.
 
 0.919
EAT13409.1
Aminotransferase, class V; COG0520 Selenocysteine lyase.
 
 0.873
nfuA
Thioredoxin-like protein; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
 
 0.714
erpA
HesB/YadR/YfhF family protein; Required for insertion of 4Fe-4S clusters for at least IspG.
  
 
 0.660
EAT11699.1
COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes.
 
  
 0.607
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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