STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RimIAcetyltransferase, GNAT family protein; Acetylates the N-terminal alanine of ribosomal protein S18. (146 aa)    
Predicted Functional Partners:
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.761
EAT11737.1
Hypothetical protein; COG3468 Type V secretory pathway, adhesin AidA.
       0.732
EAT11735.1
COG3235 Predicted membrane protein.
       0.723
TsaB
Hypothetical protein; COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone.
 
 0.718
EAT11734.1
Amidotransferase; COG0518 GMP synthase - Glutamine amidotransferase domain.
  
  
 0.584
EAT11740.1
Hypothetical protein.
       0.486
EAT11741.1
Hypothetical protein.
       0.466
EAT11739.1
Hypothetical protein; COG0541 Signal recognition particle GTPase.
       0.456
EAT13305.1
ATP-grasp domain-containing protein; COG0825 Acetyl-CoA carboxylase alpha subunit.
   
   0.408
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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