STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PseCFlagellin modification protein/polysaccharide biosynthesis protein; COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
PseB
Polysaccharide biosynthesis protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
 
 0.999
PseG
Hypothetical FlmD; COG3980 Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase.
 
  
 0.980
PseI
neuB protein; COG2089 Sialic acid synthase.
 
  
 0.963
EAT12528.1
Putative acylneuraminate cytidylyltransferase; COG1083 CMP-N-acetylneuraminic acid synthetase.
 
  
 0.938
RfbB
COG1088 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.881
EAT13145.1
UDP-glucose lipid carrier transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 0.734
WecB
COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.691
EAT12533.1
Hypothetical protein; COG0037 Predicted ATPase of the PP-loop superfamily implicated in cell cycle control.
 
    0.685
EAT12534.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
 
    0.672
EAT12810.1
Nucleotidyl transferase; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon).
  
  
 0.631
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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