STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT10835.1COG2067 Long-chain fatty acid transport protein. (540 aa)    
Predicted Functional Partners:
EAT10836.1
Hypothetical protein.
 
     0.945
EAT10837.1
COG3271 Predicted double-glycine peptidase.
 
     0.912
EAT10833.1
3-oxoadipate enol-lactone hydrolase/4-carboxymuconolactone decarboxylase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
       0.773
EAT10834.1
Hypothetical protein.
       0.773
EAT11847.1
COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.
 
     0.773
EAT12733.1
COG5380 Lipase chaperone.
  
     0.693
EAT13952.1
Hypothetical protein.
  
     0.680
EAT12345.1
GTPase - translation elongation factors.
  
     0.626
EAT12449.1
Hypothetical protein.
  
     0.608
EAT11642.1
COG2199 FOG: GGDEF domain.
  
     0.600
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.