STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11204.1COG4775 Outer membrane protein/protective antigen OMA87. (228 aa)    
Predicted Functional Partners:
EAT11795.1
COG3203 Outer membrane protein (porin).
  
     0.611
GlnK-2
COG0347 Nitrogen regulatory protein PII; Belongs to the P(II) protein family.
       0.586
EAT11856.1
CheY-like receiver protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.584
EAT11208.1
Hypothetical protein.
  
     0.528
EAT11994.1
COG3713 Outer membrane protein V.
  
     0.516
EAT11860.1
Hypothetical protein; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.479
EAT11206.1
Putative ammonium transporter; COG0004 Ammonia permease.
  
    0.447
EAT12517.1
COG1749 Flagellar hook protein FlgE.
  
     0.442
EAT13490.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.437
EAT11852.1
Putative TonB-dependent receptor; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.433
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.