STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EAT11625.1KpsD protein; COG1596 Periplasmic protein involved in polysaccharide export. (543 aa)    
Predicted Functional Partners:
EAT11626.1
KpsE protein; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
  
 0.994
EAT11627.1
Capsular polysaccharide ABC transporter, ATP-binding protein; COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
 
  
 0.993
EAT11628.1
KpsM protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
  
 0.993
EAT11615.1
KpsC protein; COG3563 Capsule polysaccharide export protein.
 
  
 0.958
ApbC
ATPase involved in chromosome partitioning; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family.
  
 
 0.873
PseB
Polysaccharide biosynthesis protein; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.846
EAT13145.1
UDP-glucose lipid carrier transferase; COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.844
EAT11621.1
Hypothetical and glycosyltransferase fusion protein; COG4641 Uncharacterized protein conserved in bacteria.
  
  
 0.838
WecC
UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; COG0677 UDP-N-acetyl-D-mannosaminuronate dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
  
  
 0.805
WecB
COG0381 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
     
 0.796
Your Current Organism:
Bermanella marisrubri
NCBI taxonomy Id: 207949
Other names: B. marisrubri, Bermanella marisrubri Pinhassi et al. 2009, CCUG 52064, CECT 7074, Oceanobacter sp. RED65, strain RED65
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.